These folders will not be displayed with run ls command.
If you want to see the hidden files too, use ls -l command.
I was trying to delete one folder containing 2 files (I guess they are worms / virus in windows) Desktop.ini and Folder.htt . I tried deleting it using Delete Button on Keyboard. I also tried Shift+Delete (I know it doesn't matter) but it didn't work.
Finally after googling a little, I found the solution.
Forcefully delete them.
- Open terminal
- Go to the folder you wish to delete.
- Delete all the files in that folder using sudo rm * (enter your root password when prompted).
- Now go up one directory using cd .. command.
- Now run sudo rmdir foldername
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